Thermal control effect on the incidence of some post-harvest rot pathogens of Solanum tuberosum (potato) was investigated in this study. Three cultivars of potato tuber whose local names are, Patiska, Mai Bawondoya and Nicola were used for the study. Five pathogenic fungi viz: Botryodiplodia theobromae, Fusarium redolens, Fusarium oxysporum, Penicillium sp. and Rhizopus oryzae associated with post harvest storage rot of root-tubers, were isolated from diseased potatoes. Among the three species of potatoes used in the study, Patiska was found most resistant followed by Mai Bawondoya, while Nicola was the least resistant. Increase in substrate (i.e. soluble starch or CMC) concentration enhanced a proportional increase in mycelial growth and in the amount of extracellular enzymes produced. Some of these test pathogens were found to produce cell wall degrading enzymes (i.e. amylase and cellulase). Preferential utilization of carbohydrate sources was established in this study based on the growth of test pathogens. Growth on potato broth medium was highest followed by growth on Cocoyam and Sweet potato broth media and least on Cassava broth medium. Growth of the test pathogens on carbohydrate sources was found at variant. The use of hot water treatment at different temperatures was found to significantly reduce post-harvest fungal populations on the surface of root-tubers. The efficacy of blanching in hot water at 60˚C was significantly higher than that of blanching in hot water at other temperatures. The control method adopted in this study showed that the problems of potatoes’ rot disease in storage (especially by the peasant farmers) can be eradicated by thermal treatments without reducing the quality of the Irish tuber.